FastQCFastQC Report
Sat 31 Dec 2022
SRR1953460.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953460.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1670758
Sequences flagged as poor quality0
Sequence length86
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT67590.40454691822514094No Hit
GAGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTC35070.20990472587891243No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA27670.16561345209779035No Hit
GCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTG25540.15286474761754845No Hit
GAGAGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCT23960.1434079621345521No Hit
AAGAGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCT23870.14286928448045738No Hit
AAGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTC23210.13891898168376268No Hit
CTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC21140.12652939563958396No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20350.12180100289808576No Hit
TAGAGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCT19360.11587554870304377No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)