FastQCFastQC Report
Sat 31 Dec 2022
SRR1953454.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953454.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2546920
Sequences flagged as poor quality0
Sequence length86
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT88460.34732147063904634No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA33000.12956826284296327No Hit
GAGCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTC31860.12509226830838818No Hit
GAGAGCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCT28380.1114287060449484No Hit
GCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTG28240.11087902250561461No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)