FastQCFastQC Report
Sat 31 Dec 2022
SRR1953448.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953448.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1496226
Sequences flagged as poor quality0
Sequence length86
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT66280.4429812073844459No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA34400.22991179140049697No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA31780.21240106775313355No Hit
GAGCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTC28900.19315263870565008No Hit
GCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTG26660.17818163833538517No Hit
AAGCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTC22190.14830647241793687No Hit
CCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTG21920.14650193219473528No Hit
CTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC21360.14275918210216904No Hit
GAGAGCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCT20630.13788024001721666No Hit
AAGAGCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCT19470.13012740053975802No Hit
TTTTGCGGGAGTGAGGGAGGGATATGCTGTATTTGCAGCAGGGACTCAGA19060.12738717279341488No Hit
TAGAGCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCT16740.11188149383849766No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)