FastQCFastQC Report
Sat 31 Dec 2022
SRR1953439.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953439.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2698098
Sequences flagged as poor quality0
Sequence length86
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT106940.3963532829422801No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA35900.13305669401185577No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA28030.10388799813794755No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)