FastQCFastQC Report
Sat 31 Dec 2022
SRR1953437.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953437.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1116643
Sequences flagged as poor quality0
Sequence length86
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT47970.42959119432083487No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA19810.17740674503847692No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA19730.1766903119439248No Hit
GAGAGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCT16040.14364483545770673No Hit
GAGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTC11810.10576343558326162No Hit
AAGAGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCT11500.10298725734187203No Hit
CTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC11210.10039018737412046No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)