FastQCFastQC Report
Sat 31 Dec 2022
SRR1953435.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953435.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1920996
Sequences flagged as poor quality0
Sequence length86
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT55170.28719476771424823No Hit
GAGAGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCT35410.18433146138773845No Hit
GAGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTC31610.1645500563249481No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA26620.1385739480977576No Hit
AAGAGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCT26600.1384698354395324No Hit
TAGAGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCT25910.1348779487307626No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA25150.13092166771820452No Hit
AAGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTC22890.11915693733875551No Hit
CTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC19250.10020843354176688No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)