FastQCFastQC Report
Sat 31 Dec 2022
SRR1953432.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953432.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1637941
Sequences flagged as poor quality0
Sequence length86
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT63050.3849345000827258No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA21190.12936973920306044No Hit
GAGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTC20410.12460766291337723No Hit
GAGAGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCT19270.11764770525922484No Hit
AAGAGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCT19000.11599929423587296No Hit
CTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC18660.11392351739165209No Hit
TAGAGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCT18590.11349615157078306No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA18180.11099300890569318No Hit
GCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTG18100.11050459082470004No Hit
CCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTG17190.10494883515340296No Hit
AAGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTC17180.10488778289327882No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)