FastQCFastQC Report
Sat 31 Dec 2022
SRR1953431.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953431.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2374587
Sequences flagged as poor quality0
Sequence length86
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT113910.4797044707142758No Hit
GAGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTC29190.12292663945351338No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA27810.11711510254204203No Hit
GAGAGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCT27210.11458834736314145No Hit
GCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTG25670.10810300907062996No Hit
CTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC25180.10603949234119449No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA24540.10334428681703386No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)