FastQCFastQC Report
Sat 31 Dec 2022
SRR1953429.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953429.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1386757
Sequences flagged as poor quality0
Sequence length86
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT59850.43158246181558846No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA26750.1928960877788971No Hit
CTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGC26150.1885694465576882No Hit
GAGAGCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCT24340.1755174122070413No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA19380.1397505114450477No Hit
GAGCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTC17720.12778013739970304No Hit
TAGAGCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCT15750.11357433205673381No Hit
GCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTG15640.11278111449951217No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)