FastQCFastQC Report
Sat 31 Dec 2022
SRR1953309.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953309.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences793872
Sequences flagged as poor quality0
Sequence length51
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATCTATCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTC19980.25167785234899326No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTC19830.24978837898300987No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCG13480.16980067315637784No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCG13200.1662736562065421No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10120.12747646975834895No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGC9580.1206743656408086No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGC9120.11487998065179274No Hit
GAACTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCT8050.10140173730777757No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)