FastQCFastQC Report
Sat 31 Dec 2022
SRR1953302.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953302.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479490
Sequences flagged as poor quality0
Sequence length51
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT22890.4773822186072702No Hit
TATGATAGGCATGCACTTGACCACTTGAAAAATGACGAAATCACTGAAAAA9530.19875284156082507No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6470.1349350351415045No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC4990.10406890654653903No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4890.10198335731714948No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)