FastQCFastQC Report
Sat 31 Dec 2022
SRR1953301.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953301.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466018
Sequences flagged as poor quality0
Sequence length51
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT37460.8038316116544854No Hit
GAATCTATCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTC19890.42680754820629246No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCG16800.3605010965241686No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGC12620.270804990365179No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11340.24333824015381378No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC7680.16480050126819135No Hit
ATTTGAAGGCAAAGATATGTTTTCCTTGTTTTTTATTACTGTTTCAGAAGA7080.15192546210661392No Hit
GCTGTCACTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGC5770.12381495993716982No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCG5700.12231287203498577No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5410.11608993644022333No Hit
GAATCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTC5290.11351492860790784No Hit
AGAGATAGGAAGGAATATAAGCATTTGGAGATTTTTAACCAAGTAGTATGT4900.10514615315288252No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4810.10321489727864588No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)