FastQCFastQC Report
Sat 31 Dec 2022
SRR1953296.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953296.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1368287
Sequences flagged as poor quality0
Sequence length51
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT53640.3920230185626261No Hit
GATACTAAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT30160.2204215928383446No Hit
GAGTCCAACTGTGTTGAGCACATCGAGTCACGTACTCTGGCTATCGCCCGC22720.16604703545381927No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT15840.11576518668963455No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)