FastQCFastQC Report
Sat 31 Dec 2022
SRR1953291.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953291.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461330
Sequences flagged as poor quality0
Sequence length51
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT26430.5729087637916459No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8640.18728459020657665No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC7750.16799254329872326No Hit
GAATCTATCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTC6030.1307090369150066No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGC5320.11531875230312356No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCG4990.10816552142717795No Hit
GAATTGAGGGTGCAGATTTTACAATTCTGGTAAAAATCATCTTAAACACAG4960.1075152277111829No Hit
TCTTATAGGATTTACAGCGCTCCGGGAGAGAGAATGTTACTGCAGATCCCT4840.10491405284720266No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4780.10361346541521255No Hit
GAGGACAGGACCATAAAACTTTATTGATTTACTTTGTAACTTCCTGTGAAT4680.10144581969522902No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)