FastQCFastQC Report
Sat 31 Dec 2022
SRR1953288.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953288.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences894975
Sequences flagged as poor quality0
Sequence length51
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT42930.4796782033017682No Hit
GAATCTATCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTC19440.21721277130646108TruSeq Adapter, Index 4 (95% over 23bp)
GAATGAAACCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCG14150.15810497499930165No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13070.14603759881560938No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGC11060.12357887091818207No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)