FastQCFastQC Report
Sat 31 Dec 2022
SRR1953281.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953281.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542613
Sequences flagged as poor quality0
Sequence length51
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT33500.6173829230040563No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCG19680.36268943058865155No Hit
GAATCTATCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTC19170.3532904666862018No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGC15100.2782830488764552No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10550.19442954739381474No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC8010.14761902129141763No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCG6320.1164734350264369No Hit
GACATAAGCTTCATTAAGTTGGACTAAGCGACCTTGAATGGATTCGACTGA6040.1113132195505821No Hit
GCTGTCACTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCTGC5730.10560012384517144No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)