FastQCFastQC Report
Sat 31 Dec 2022
SRR1953261.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953261.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences375232
Sequences flagged as poor quality0
Sequence length51
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14530.38722710216612655No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC6250.16656361930752175No Hit
GAATCTATCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTC4940.1316518847006652No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4650.1239233327647962No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCG4300.11459577008357497No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)