FastQCFastQC Report
Sat 31 Dec 2022
SRR1953259.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953259.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1154726
Sequences flagged as poor quality0
Sequence length51
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT43740.378791159114803No Hit
GAATCTATCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTC18830.1630689877945071No Hit
CTAAAGAACCAAGATACTAACAAAACCAAAGTGATCAGGACGATTATTGAG16830.14574886163470815No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCG14510.12565751528934135No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13660.11829646167142681No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)