FastQCFastQC Report
Sat 31 Dec 2022
SRR1953249.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953249.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1128048
Sequences flagged as poor quality0
Sequence length51
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT45070.3995397358977632No Hit
CTAAAGAACCAAGATACTAACAAAACCAAAGTGATCAGGACGATTATTGAG17490.15504659376196758No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC14530.12880657560671177No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14270.1265017091471285No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)