FastQCFastQC Report
Sat 31 Dec 2022
SRR1953243.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953243.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences795251
Sequences flagged as poor quality0
Sequence length51
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT47970.6032057803133853No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14630.1839670745462753No Hit
CTAAAGAACCAAGATACTAACAAAACCAAAGTGATCAGGACGATTATTGAG12760.16045248607043563No Hit
CAGGCTAGGACACCTGACTTCATAGAGATTTTTGTTGTTCCTAGGAATTTT10520.13228527848440302No Hit
TGGAATAGGGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATG10410.13090206739758894No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC10140.12750691291177252No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)