FastQCFastQC Report
Sat 31 Dec 2022
SRR1953233.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953233.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences355287
Sequences flagged as poor quality0
Sequence length51
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATCTATCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTC34970.9842746849729936No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCG28250.7951318230050636No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGC20900.5882568177276398No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT17810.5012848767334577No Hit
GAATCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTC10920.3073571506978865No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCG9650.27161140148668544No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC9110.25641242150711957No Hit
GAATGAATGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCT8590.24177636671198216No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGC7100.19983844047206908No Hit
GAATGAACTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTC7030.1978682023265698No Hit
GAACTGACTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCT6980.19646088936549885No Hit
GCTGTCACTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC5960.16775170495965233No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5530.1556488134944425No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCG3780.1063928598569607No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)