FastQCFastQC Report
Sat 18 Jun 2016
SRR3137980_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3137980_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2739646
Sequences flagged as poor quality0
Sequence length75
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGG69650.2542299260561401TruSeq Adapter, Index 1 (96% over 28bp)
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGCTGGTCGTCTACCAGCTCGATAATTG45470.1659703479938649No Hit
ATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGGGGG41010.14969087247038484TruSeq Adapter, Index 1 (96% over 28bp)
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGAGATGTTGGAACTCTACCAATTGGAG37580.1371710067651076No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT34610.12633019010485297No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATATGATATGGCGCACTACACATGCTAGC33100.12081852910923528No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAACCAATGAGAGAGCCTCACTTAGT28890.10545158024065883No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA47400.043.3972241
GTATCAA101700.037.466411
CTCGATA9500.035.59016465
CGATAAT9850.034.6764367
GCTCGAT9900.033.80368464
CGACGAG7250.032.8327224
TCGATAA10600.031.89800666
TGGTCGT11050.031.84793351
TCGTCTA11400.031.47486554
TCGTATG30800.031.13964540
CTGGTCG11600.030.63532850
TATGCCG31200.030.63095943
CTCGTAT28150.030.27179139
GTCGTCT11750.029.95006453
ATCTCGT28950.029.435837
TCAGCGC12200.029.12814344
GCTCGTC12450.028.8193139
GTCTACC12000.028.75055556
CAATGCG8400.028.74793219
ATCAACG131950.028.6040463