SRR3137980_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3137980_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2739646
Sequences flagged as poor quality	0
Sequence length	75
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGG	6965	0.2542299260561401	TruSeq Adapter, Index 1 (96% over 28bp)
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGCTGGTCGTCTACCAGCTCGATAATTG	4547	0.1659703479938649	No Hit
ATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGGGGG	4101	0.14969087247038484	TruSeq Adapter, Index 1 (96% over 28bp)
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGAGATGTTGGAACTCTACCAATTGGAG	3758	0.1371710067651076	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3461	0.12633019010485297	No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATATGATATGGCGCACTACACATGCTAGC	3310	0.12081852910923528	No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAACCAATGAGAGAGCCTCACTTAGT	2889	0.10545158024065883	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	4740	43.397224	1
GTATCAA	10170	37.46641	1
CTCGATA	950	35.590164	65
CGATAAT	985	34.67643	67
GCTCGAT	990	33.803684	64
CGACGAG	725	32.83272	24
TCGATAA	1060	31.898006	66
TGGTCGT	1105	31.847933	51
TCGTCTA	1140	31.474865	54
TCGTATG	3080	31.139645	40
CTGGTCG	1160	30.635328	50
TATGCCG	3120	30.630959	43
CTCGTAT	2815	30.271791	39
GTCGTCT	1175	29.950064	53
ATCTCGT	2895	29.4358	37
TCAGCGC	1220	29.128143	44
GCTCGTC	1245	28.81931	39
GTCTACC	1200	28.750555	56
CAATGCG	840	28.747932	19
ATCAACG	13195	28.604046	3