SRR3137947_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3137947_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1464207
Sequences flagged as poor quality	0
Sequence length	75
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGG	23971	1.6371319082616052	RNA PCR Primer, Index 46 (96% over 28bp)
ATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGGGGG	13323	0.9099123279700206	RNA PCR Primer, Index 46 (96% over 28bp)
ACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGGGGGGG	8434	0.5760114519326844	RNA PCR Primer, Index 46 (96% over 28bp)
CACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGGGGGGGG	1859	0.1269629225922291	TruSeq Adapter, Index 4 (96% over 27bp)
TTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGGG	1642	0.11214261371513727	TruSeq Adapter, Index 4 (96% over 27bp)

Adapter graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	1940	47.840446	1
GTATCAA	4100	37.363174	1
TCTCGTA	6710	32.59731	38
CTCGTAT	6795	32.54495	39
TCGTATG	7085	32.478878	40
AATCTCG	6805	32.39573	36
TATGCCG	7145	32.35099	43
ATGCCGT	7160	32.186848	44
ATCTCGT	6860	32.03541	37
CGTATGC	7270	31.699839	41
TGCCGTC	7210	31.580841	45
CGTCTTC	6985	31.511513	48
CGAATCT	7120	31.398582	34
CCGTCTT	7155	31.341425	47
GCGAATC	7375	31.2953	33
GCCGTCT	7185	30.874449	46
GAATCTC	7200	30.858044	35
GTATGCC	7510	30.77867	42
GCTTGAA	7565	30.14446	56
TGCTTGA	7470	29.973614	55