Basic Statistics
Measure | Value |
---|---|
Filename | SRR3137897_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4644257 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGG | 7712 | 0.16605454866085145 | TruSeq Adapter, Index 11 (96% over 28bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTACCCG | 1725 | 0.0 | 41.605385 | 1 |
TACCTGG | 8105 | 0.0 | 35.845478 | 2 |
TACCCGG | 1880 | 0.0 | 35.60567 | 2 |
GTACCTG | 9040 | 0.0 | 33.01589 | 1 |
TATGCCG | 2235 | 0.0 | 31.180878 | 43 |
ACCTGGG | 8675 | 0.0 | 30.86509 | 3 |
ACCCGGG | 2055 | 0.0 | 30.222889 | 3 |
CTCGTAT | 2245 | 0.0 | 29.351583 | 39 |
TCGTATG | 2380 | 0.0 | 28.99129 | 40 |
TCTCGTA | 2295 | 0.0 | 28.411463 | 38 |
CGTATGC | 2585 | 0.0 | 26.959095 | 41 |
ATGCCGT | 2675 | 0.0 | 26.438972 | 44 |
TGCCGTC | 2670 | 0.0 | 26.229776 | 45 |
GATCTCG | 2515 | 0.0 | 26.200235 | 36 |
TGCGACG | 515 | 0.0 | 26.125938 | 22 |
ATCTCGT | 2505 | 0.0 | 25.61622 | 37 |
GCCGTCT | 2795 | 0.0 | 24.686413 | 46 |
CCGTCTT | 2800 | 0.0 | 24.51912 | 47 |
CTCGATA | 600 | 0.0 | 23.574497 | 65 |
CCTGGGG | 6145 | 0.0 | 23.527046 | 4 |