Basic Statistics
Measure | Value |
---|---|
Filename | SRR3137896_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3433911 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | 13297 | 0.38722611040297783 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTACCCG | 855 | 0.0 | 36.767143 | 1 |
TACCTGG | 4575 | 0.0 | 29.959677 | 2 |
CGACGAG | 315 | 0.0 | 28.477587 | 24 |
GTACCTG | 5050 | 0.0 | 28.456833 | 1 |
TACCCGG | 985 | 0.0 | 27.33985 | 2 |
ACCTGGG | 4895 | 0.0 | 25.868586 | 3 |
GTACACG | 645 | 0.0 | 25.707872 | 1 |
CGATACG | 110 | 1.1547236E-6 | 25.088848 | 59 |
ACCCGGG | 990 | 0.0 | 24.396198 | 3 |
TGCGACG | 385 | 0.0 | 23.300182 | 22 |
CGCGAGT | 105 | 2.2839375E-5 | 22.998112 | 8 |
GCTCGAT | 330 | 0.0 | 21.952742 | 64 |
CGCACTA | 425 | 0.0 | 21.10415 | 58 |
ATGCGAC | 445 | 0.0 | 20.93422 | 21 |
ACGAGTC | 445 | 0.0 | 20.93361 | 26 |
GAGTACT | 7020 | 0.0 | 20.19912 | 12 |
AGTACTT | 6735 | 0.0 | 20.132977 | 13 |
GTACCGG | 225 | 2.5283953E-10 | 19.959307 | 1 |
GTACTTT | 6770 | 0.0 | 19.774359 | 14 |
ATCGACG | 200 | 2.8823706E-8 | 18.976759 | 3 |