SRR3137877_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3137877_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3552305
Sequences flagged as poor quality	0
Sequence length	75
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAGGCAGAAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGG	8219	0.231370898613717	RNA PCR Primer, Index 17 (96% over 28bp)
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGAGATGTTGGAACTCTACCAATTGGAG	6033	0.16983338986939464	No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAACCAATGAGAGAGCCTCACTTAGT	4935	0.13892388181758042	No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGA	4363	0.12282166086526917	No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTT	4310	0.12132967186094662	No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAACCAATGAGAGAGCCTCACTTAGTTAC	4132	0.11631884086529731	No Hit
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAA	3947	0.11111095471813372	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	2065	0.0	33.41326	43
CTCGTAT	2115	0.0	31.318413	39
ATCGTCA	585	0.0	31.256117	10
GCTCGAT	460	0.0	30.749279	64
TGCGACG	600	0.0	30.474285	22
ATCTCGT	2205	0.0	30.040112	37
ACGACGA	385	0.0	29.570734	65
TCTCGTA	2265	0.0	29.396662	38
GTACCCG	320	0.0	29.11484	1
TGCCGTC	2350	0.0	29.067402	45
TCGTATG	2445	0.0	28.361298	40
ATGCCGT	2455	0.0	28.245771	44
CCGCGTA	160	1.8189894E-12	28.030592	45
AATCTCG	2375	0.0	27.889872	36
CCGTCTT	2450	0.0	27.31811	47
ATGCGAC	720	0.0	26.35355	21
GCGACGA	755	0.0	25.588804	23
GCCGTCT	2635	0.0	25.53071	46
CGAGTAC	610	0.0	25.450222	69
TGGTCGT	590	0.0	25.143831	51