SRR3137873_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3137873_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4866921
Sequences flagged as poor quality	0
Sequence length	75
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAA	9303	0.19114754482351368	No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGAGATGTTGGAACTCTACCAATTGGAG	7460	0.1532796607958091	No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAACCAATGAGAGAGCCTCACTTAGT	6931	0.14241036581444408	No Hit
CTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGG	6437	0.1322602113327913	TruSeq Adapter, Index 1 (96% over 28bp)
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGA	5816	0.11950060418075412	No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAACCAATGAGAGAGCCTCACTTAGTTAC	5668	0.11645966721054235	No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTT	5629	0.1156583392251487	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGTCA	605	0.0	45.620605	10
TGGTCGT	770	0.0	40.772575	51
GCTCGAT	760	0.0	40.40075	64
TGCGCAA	35	0.0013482721	39.428425	68
GTACCCG	1430	0.0	37.39804	1
GCTCGTC	860	0.0	36.505302	39
ATCTCGT	1530	0.0	36.077923	37
GTCGTCT	880	0.0	35.676373	53
TATGCCG	1700	0.0	35.51421	43
ACGACGA	1770	0.0	35.084255	65
GCATTAC	3265	0.0	34.8697	69
GCGCTGG	950	0.0	34.136715	47
GTCTACC	920	0.0	34.124874	56
GATCTCG	1645	0.0	33.34604	36
CCTGGGG	2460	0.0	32.960243	4
CGAATAC	520	0.0	32.509495	69
TCGATAA	995	0.0	32.24611	66
GCGCAAC	65	2.3232773E-5	31.845709	60
CGAGTAC	1380	0.0	31.749882	69
GTCAGCG	1060	0.0	31.244844	43