SRR3137872_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3137872_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5244686
Sequences flagged as poor quality	0
Sequence length	75
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGG	10088	0.19234707282762017	RNA PCR Primer, Index 39 (96% over 30bp)
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGAGATGTTGGAACTCTACCAATTGGAG	7258	0.13838769375325807	No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAACCAATGAGAGAGCCTCACTTAGT	6090	0.11611753306108316	No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAACCAATGAGAGAGCCTCACTTAGTTAC	5542	0.10566886177742577	No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGA	5491	0.1046964489389832	No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTT	5420	0.10334269773252393	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTACCCG	1380	39.004032	1
TATGCCG	2785	32.08372	43
ATCTCGT	2745	31.169054	37
TCGTATG	2880	30.905909	40
CTCGTAT	2820	30.584768	39
TACCTGG	7960	30.168947	2
TCTCGTA	2845	29.830952	38
TGCCGTC	3120	28.859983	45
TACCCGG	1815	27.945036	2
CCGTCTT	3175	27.925673	47
GTACCTG	8870	27.851809	1
ACCTGGG	8085	27.48336	3
ATGCCGT	3305	27.244522	44
ACCCGGG	1735	26.648287	3
ACGATCG	325	26.53817	60
CGTATGC	3425	26.08876	41
GCTCGAT	1010	25.960108	64
GCCGTCT	3590	24.88946	46
CGTCTTC	3590	24.793596	48
TGGTCGT	1075	24.390427	51