SRR3137871_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3137871_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4163909
Sequences flagged as poor quality	0
Sequence length	75
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAGGCAGAAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGG	11757	0.28235487374964247	RNA PCR Primer, Index 17 (96% over 28bp)
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGAGATGTTGGAACTCTACCAATTGGAG	5822	0.1398205388254162	No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAACCAATGAGAGAGCCTCACTTAGT	5257	0.12625155833136603	No Hit
ATACACATCTCCGAGCCCACGAGACAGGCAGAAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGGGGG	5088	0.12219287213049085	RNA PCR Primer, Index 17 (96% over 28bp)
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGA	4669	0.11213021225968195	No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTT	4591	0.11025697247466262	No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAACCAATGAGAGAGCCTCACTTAGTTAC	4532	0.10884003468855828	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	2985	32.59222	43
GTACCCG	1040	31.519005	1
CTCGTAT	2930	30.849129	39
TCGTATG	3255	29.570755	40
GCTCGAT	795	29.50876	64
TCTCGTA	3065	29.490356	38
ATGCCGT	3345	29.08454	44
TGCCGTC	3365	28.911673	45
ATCTCGT	3130	28.767717	37
CTCGATA	855	27.841473	65
CCGTCTT	3580	27.272053	47
GCCGTCT	3655	26.712114	46
AATCTCG	3420	26.328348	36
TGGTCGT	865	26.323416	51
CGTATGC	3720	26.245369	41
CGTCTTC	3700	26.201069	48
GTATGCC	3805	25.659073	42
TACCTGG	5600	24.584824	2
TCGTCTA	980	24.290552	54
GTCGTCT	960	24.077864	53