SRR3137870_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3137870_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1781059
Sequences flagged as poor quality	0
Sequence length	75
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGAGATGTTGGAACTCTACCAATTGGAG	3083	0.17309926285429064	No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAACCAATGAGAGAGCCTCACTTAGT	2608	0.1464297364657768	No Hit
CTTATACACATCTCCGAGCCCACGAGACCGAGGCTGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGG	2439	0.13694099970860035	TruSeq Adapter, Index 10 (96% over 28bp)
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGA	2237	0.12559943269706395	No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTT	2035	0.11425786568552755	No Hit
GTACTAAGCAGTGGTATCAACGCAAAGCAGTGGTATCAACGCAGAGTACTAAGCAGTGGTATCAACGCAAAGCAG	2029	0.1139209874574621	No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAACCAATGAGAGAGCCTCACTTAGTTAC	1983	0.1113382543756271	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGTCA	335	0.0	36.04472	10
GTACCCG	375	0.0	34.966816	1
ATCTCGT	775	0.0	33.83125	37
GATCTCG	765	0.0	33.822525	36
TATGCCG	870	0.0	32.913742	43
GCTCGAT	355	0.0	32.06947	64
TTTCGCC	165	0.0	31.362703	33
CTCGTAT	860	0.0	30.889486	39
TCGTATG	950	0.0	30.505215	40
TACCTGG	2925	0.0	30.436703	2
TGCCGTC	965	0.0	30.030197	45
CCGTCTT	980	0.0	29.21852	47
CTCGATA	390	0.0	29.19144	65
TCTCGTA	890	0.0	29.072985	38
CGATCCG	95	3.205514E-7	29.052586	40
ATGCCGT	1015	0.0	28.891579	44
CGATAGC	180	0.0	28.749146	63
TGGTCGT	440	0.0	28.226433	51
ACCTGGG	2705	0.0	28.065407	3
CGTCTTC	1025	0.0	27.935757	48