SRR3137869_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3137869_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4647342
Sequences flagged as poor quality	0
Sequence length	75
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGG	11668	0.2510682450312458	RNA PCR Primer, Index 39 (96% over 30bp)
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGAGATGTTGGAACTCTACCAATTGGAG	6488	0.13960668270163892	No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAACCAATGAGAGAGCCTCACTTAGT	5387	0.1159157212875661	No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGA	5206	0.11202102190886747	No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTT	5176	0.11137549162510527	No Hit
ATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGGGGG	5001	0.10760989830315909	RNA PCR Primer, Index 39 (96% over 30bp)
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAACCAATGAGAGAGCCTCACTTAGTTAC	4861	0.10459742364560215	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	2965	32.9284	43
ATCTCGT	3180	30.810595	37
CTCGTAT	3195	30.773924	39
GTACCCG	825	30.532467	1
TCGTATG	3350	29.761988	40
CGACGAG	885	29.236599	24
TCTCGTA	3390	29.105509	38
GCTCGAT	755	28.787714	64
TGCGACG	900	28.749323	22
ATCGTCA	955	28.53921	10
ATGCCGT	3450	28.299334	44
TGCCGTC	3560	27.328009	45
CCGTCTT	3600	27.120487	47
TACCTGG	6185	26.77901	2
CATCTCG	3895	25.86332	36
CGTATGC	3870	25.40638	41
CGTCTTC	3905	25.090588	48
ACGAGTC	1050	24.642279	26
ATGCGAC	1080	24.596642	21
GCCGTCT	3970	24.41882	46