SRR3137868_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3137868_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3975576
Sequences flagged as poor quality	0
Sequence length	75
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGG	13725	0.34523299265314006	TruSeq Adapter, Index 1 (96% over 28bp)
ATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGGGGG	5757	0.1448092050057652	TruSeq Adapter, Index 1 (96% over 28bp)
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGAGATGTTGGAACTCTACCAATTGGAG	5655	0.14224353904943585	No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAACCAATGAGAGAGCCTCACTTAGT	4829	0.12146667552072957	No Hit
GATATAGGCTTACTAGGAGGGTGAATACGTAGGCTTGAATTAATGCTACTGCAAATTCTAGAATTGTGAGTAGAA	4430	0.11143039398567654	No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGA	4361	0.10969479642698315	No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTT	4328	0.10886472802934719	No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAACCAATGAGAGAGCCTCACTTAGTTAC	4116	0.1035321674142313	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	3475	35.939404	43
TCTCGTA	3405	34.550503	38
CTCGTAT	3460	34.30042	39
ATGCCGT	3715	33.896214	44
TCGTATG	3760	33.67405	40
TGCCGTC	3745	33.62426	45
CCGTCTT	3885	32.235374	47
GATCTCG	3665	31.816645	36
ATCTCGT	3670	31.773298	37
GCCGTCT	4195	29.935123	46
CGTATGC	4250	29.54773	41
CGTCTTC	4465	28.588896	48
GTATGCC	4485	28.076443	42
GGCATGA	4475	27.830809	31
TGCGACG	525	27.599178	22
ATCGTCA	565	27.478096	10
GCTCGAT	470	27.159111	64
GTACCCG	645	26.748102	1
TACCTGG	5255	26.26455	2
ATGCGAC	625	25.391245	21