SRR3137867_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3137867_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3555595
Sequences flagged as poor quality	0
Sequence length	75
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGAGATGTTGGAACTCTACCAATTGGAG	6479	0.18221985349850026	No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAACCAATGAGAGAGCCTCACTTAGT	5882	0.16542941476742992	No Hit
CTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGG	5101	0.14346403344587896	TruSeq Adapter, Index 1 (96% over 28bp)
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGA	5023	0.14127030778252303	No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTT	4847	0.13632036269597636	No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAACCAATGAGAGAGCCTCACTTAGTTAC	4575	0.12867044756222235	No Hit
GTCTTAGCAGTAGTTTATAAGGAATATATCCCATTTTTAGTTATAATGATGCCTTATGTGATAGATGCCTCTTTA	3642	0.10243011366592651	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTACCCG	1200	38.530857	1
GCTCGAT	760	37.223064	64
CTCGATA	835	34.70601	65
TATGCCG	1430	34.016914	43
TACCTGG	6320	33.95928	2
TGGTCGT	885	32.35539	51
ACCTGGG	6460	30.873116	3
GTACCTG	7085	30.779556	1
CTGGTCG	980	30.275003	50
TCGTATG	1575	30.228065	40
TGCGACG	665	30.089724	22
CTCGTAT	1505	30.029398	39
TCGATAA	980	29.570934	66
ATCGTCA	705	29.361624	10
TCGTCTA	965	29.315573	54
GCTCGTC	1005	29.178616	39
GTCGTCT	1025	28.945858	53
ACCCGGG	1465	28.263681	3
TACCCGG	1575	28.26144	2
CGTCATT	1040	28.196646	26