Basic Statistics
Measure | Value |
---|---|
Filename | SRR3137842_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2477469 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3194 | 0.12892189569274126 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2925 | 0.0 | 42.95102 | 1 |
GCTCGAT | 400 | 0.0 | 33.637096 | 64 |
GTATCAA | 6365 | 0.0 | 33.348377 | 1 |
TATGCCG | 885 | 0.0 | 32.35685 | 43 |
CAATGCG | 490 | 0.0 | 30.273314 | 19 |
TACCTGG | 1410 | 0.0 | 29.850706 | 2 |
GTACTAG | 745 | 0.0 | 28.723238 | 1 |
CTCGATA | 470 | 0.0 | 28.627316 | 65 |
TAGTCGG | 375 | 0.0 | 28.520235 | 40 |
TCTCGTA | 950 | 0.0 | 28.325977 | 38 |
AACGACG | 50 | 0.007737829 | 27.599113 | 67 |
ATGCGAC | 550 | 0.0 | 27.599112 | 21 |
ATCGTCA | 525 | 0.0 | 27.597996 | 10 |
CTCGTAT | 945 | 0.0 | 27.380625 | 39 |
CGCACTA | 455 | 0.0 | 27.296926 | 58 |
TCGTATG | 1030 | 0.0 | 27.13129 | 40 |
ATCTCGT | 1070 | 0.0 | 27.084335 | 37 |
TTAGTCG | 395 | 0.0 | 27.075623 | 39 |
AATCTCG | 1105 | 0.0 | 26.850899 | 36 |
TGGTCGT | 520 | 0.0 | 25.875732 | 51 |