Basic Statistics
Measure | Value |
---|---|
Filename | SRR1931139_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1561567 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4336 | 0.27766980219228504 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3539 | 0.2266313260974393 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1919 | 0.12288937970641028 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2160 | 0.0 | 57.288956 | 1 |
GTATCAA | 4090 | 0.0 | 41.119156 | 1 |
ATCAACG | 4705 | 0.0 | 34.84886 | 3 |
CAACGCA | 4770 | 0.0 | 34.683304 | 5 |
TCAACGC | 4790 | 0.0 | 34.23817 | 4 |
AACGCAG | 4970 | 0.0 | 33.46387 | 6 |
TATCAAC | 4940 | 0.0 | 33.078976 | 2 |
ACGCAGA | 5620 | 0.0 | 29.093643 | 7 |
CGCAGAG | 5575 | 0.0 | 28.475906 | 8 |
GTACTAG | 540 | 0.0 | 28.312689 | 1 |
GAGTACT | 3815 | 0.0 | 23.672764 | 12-13 |
GCAGAGT | 6425 | 0.0 | 23.59824 | 9 |
GTGGTAT | 960 | 0.0 | 22.893463 | 1 |
TATACCG | 190 | 3.2619027E-7 | 22.518967 | 5 |
GTACATG | 4170 | 0.0 | 22.456646 | 1 |
TACATGG | 4195 | 0.0 | 21.64086 | 2 |
CAGAGTA | 6165 | 0.0 | 21.54819 | 10-11 |
ACATGGG | 4380 | 0.0 | 20.893774 | 3 |
GTACTTT | 4395 | 0.0 | 20.812748 | 14-15 |
AGAGTAC | 5680 | 0.0 | 20.375706 | 10-11 |