Basic Statistics
Measure | Value |
---|---|
Filename | SRR1931089_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1073258 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 5962 | 0.5555048273574481 | No Hit |
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT | 2892 | 0.26945990619217375 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2709 | 0.2524090200119636 | No Hit |
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC | 2385 | 0.2222205657912636 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2248 | 0.20945569471646144 | No Hit |
CTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGC | 2178 | 0.20293349781692754 | No Hit |
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA | 2094 | 0.1951068615374868 | No Hit |
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA | 1894 | 0.1764720132531041 | No Hit |
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC | 1655 | 0.1542033695532668 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1651 | 0.15383067258757913 | No Hit |
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC | 1649 | 0.1536443241047353 | No Hit |
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT | 1649 | 0.1536443241047353 | No Hit |
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC | 1529 | 0.14246341513410568 | No Hit |
GCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGT | 1503 | 0.14004088485713592 | No Hit |
GTACCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTA | 1376 | 0.12820775619655292 | No Hit |
TATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATC | 1304 | 0.12149921081417517 | No Hit |
GTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTAT | 1284 | 0.11963572598573688 | No Hit |
ACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGC | 1225 | 0.114138445741844 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TACCTGG | 1960 | 0.0 | 64.70365 | 2 |
ACCTGGG | 2045 | 0.0 | 61.549725 | 3 |
GTACCTG | 2135 | 0.0 | 59.672585 | 1 |
CCTGGGG | 1790 | 0.0 | 53.60088 | 4 |
CTGGGGG | 1510 | 0.0 | 51.90158 | 5 |
GTACCCG | 165 | 0.0 | 48.97821 | 1 |
ATAACGC | 160 | 0.0 | 38.591972 | 3 |
TGGGGGG | 2735 | 0.0 | 34.385983 | 6 |
GTATAAC | 280 | 0.0 | 32.257706 | 1 |
GTACACG | 180 | 5.456968E-12 | 31.691782 | 1 |
TAACGCA | 215 | 0.0 | 30.928806 | 4 |
TATCACG | 110 | 2.7342103E-6 | 30.22588 | 2 |
TCACGCA | 115 | 3.8656435E-6 | 28.911709 | 4 |
GGGGGGA | 2840 | 0.0 | 28.599033 | 7 |
TAGTACT | 1030 | 0.0 | 27.207485 | 4 |
GGGGAAT | 3070 | 0.0 | 26.456436 | 9 |
TCTAACG | 290 | 0.0 | 26.205688 | 2 |
CTAACGC | 295 | 0.0 | 25.761526 | 3 |
CGCCTAC | 300 | 0.0 | 25.332165 | 7 |
CTGTGCG | 1040 | 0.0 | 25.119036 | 9 |