Basic Statistics
Measure | Value |
---|---|
Filename | SRR1931067_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1144926 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA | 3432 | 0.2997573642314001 | No Hit |
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA | 3087 | 0.26962441240743945 | No Hit |
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC | 2864 | 0.250147171083546 | No Hit |
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC | 2594 | 0.22656486096044637 | No Hit |
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC | 2465 | 0.21529775723496541 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2073 | 0.18105973661179847 | No Hit |
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT | 1609 | 0.140533099955805 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1584 | 0.13834955272218466 | No Hit |
GAATATATCCCATTTTTAGTTATAATGATGCCTTATGTGATAGATGCCTC | 1534 | 0.13398245825494398 | No Hit |
GTCTTAGCAGTAGTTTATAAGGAATATATCCCATTTTTAGTTATAATGAT | 1474 | 0.12874194489425517 | No Hit |
CTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATC | 1411 | 0.12323940586553192 | No Hit |
GTACCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTA | 1406 | 0.12280269641880784 | No Hit |
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA | 1396 | 0.1219292775253597 | No Hit |
TTGATATTCTCTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCC | 1388 | 0.12123054241060122 | No Hit |
GAGTAGGGATGAGCATAAACCAACAACTCTCAAAGAAGATGGGAAGCTAT | 1382 | 0.12070649107453232 | No Hit |
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC | 1362 | 0.11895965328763607 | No Hit |
ATGTGATAGATGCCTCTTTAAAATATCTAAGTGCTGGGGTTATGAGTAGG | 1328 | 0.1159900290499124 | No Hit |
GGTTTATACTTCAATATAAGCCTTGGTAGGGATAGATAGCCACCTATATA | 1216 | 0.10620773744329329 | No Hit |
CCATCATGCTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCC | 1161 | 0.10140393352932853 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TACCTGG | 1785 | 0.0 | 62.361332 | 2 |
ACCTGGG | 1900 | 0.0 | 59.08544 | 3 |
GTACCTG | 1925 | 0.0 | 58.81024 | 1 |
CCTGGGG | 1725 | 0.0 | 50.800545 | 4 |
CTGGGGG | 1515 | 0.0 | 43.45792 | 5 |
ATAACGC | 155 | 0.0 | 39.728065 | 3 |
TATCACG | 85 | 1.6635611E-5 | 33.43629 | 2 |
GTACACG | 200 | 0.0 | 33.157654 | 1 |
TGGGGGG | 3270 | 0.0 | 30.7069 | 6 |
TAACGCA | 210 | 1.8189894E-12 | 29.323095 | 4 |
GTATAAC | 300 | 0.0 | 28.420847 | 1 |
GTAGCGC | 90 | 9.093985E-4 | 26.3156 | 3 |
GTCCTAC | 650 | 0.0 | 26.234627 | 1 |
CTATTGA | 1545 | 0.0 | 25.139242 | 9 |
GCATCGT | 720 | 0.0 | 24.997637 | 8 |
GTACATG | 4325 | 0.0 | 24.751873 | 1 |
GTACTAG | 805 | 0.0 | 24.713781 | 1 |
TAGGCAT | 885 | 0.0 | 24.619621 | 5 |
CATGGGG | 2735 | 0.0 | 24.5933 | 4 |
GAGTACC | 425 | 0.0 | 24.519945 | 1 |