Basic Statistics
Measure | Value |
---|---|
Filename | SRR1931052_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2162135 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6074 | 0.280926029133241 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5638 | 0.2607607758072461 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3213 | 0.14860311682665514 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2930 | 0.0 | 64.38638 | 1 |
GTATCAA | 5760 | 0.0 | 42.15699 | 1 |
ACGCGAG | 70 | 2.0677512E-4 | 33.889854 | 7 |
ATCAACG | 7175 | 0.0 | 33.37563 | 3 |
TCAACGC | 7315 | 0.0 | 32.801815 | 4 |
CAACGCA | 7445 | 0.0 | 31.929405 | 5 |
TATCAAC | 7685 | 0.0 | 31.223997 | 2 |
AACGCAG | 7755 | 0.0 | 30.896358 | 6 |
CGCGAGT | 85 | 6.4519525E-4 | 27.90929 | 8 |
CGGGCGT | 260 | 0.0 | 27.372574 | 6 |
ACGCAGA | 8795 | 0.0 | 27.02711 | 7 |
CGCAGAG | 8865 | 0.0 | 26.867218 | 8 |
GGCGTCG | 245 | 1.0913936E-11 | 25.17532 | 8 |
TATCACG | 155 | 1.4074303E-6 | 24.52445 | 2 |
ACGGGCG | 265 | 3.274181E-11 | 23.276373 | 5 |
GCAGAGT | 10055 | 0.0 | 23.074087 | 9 |
CGCGGAA | 95 | 3.3232573E-7 | 22.477442 | 32-33 |
GTACATG | 6120 | 0.0 | 22.284435 | 1 |
GAGTACT | 7345 | 0.0 | 21.2198 | 12-13 |
CAGAGTA | 9740 | 0.0 | 21.019363 | 10-11 |