Basic Statistics
Measure | Value |
---|---|
Filename | SRR1931033_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1247670 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 54420 | 4.3617302652143595 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1267 | 0.10154928787259451 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1085 | 0.0 | 60.867947 | 1 |
GTATCAA | 1935 | 0.0 | 38.627853 | 1 |
ATCAACG | 2290 | 0.0 | 32.756294 | 3 |
TAACGCA | 190 | 5.456968E-12 | 31.790228 | 4 |
TCAACGC | 2385 | 0.0 | 31.44589 | 4 |
ATAACGC | 210 | 0.0 | 31.165064 | 3 |
CAACGCA | 2470 | 0.0 | 30.762112 | 5 |
TATCAAC | 2390 | 0.0 | 30.415339 | 2 |
AACGCAG | 2755 | 0.0 | 28.031319 | 6 |
TATAACG | 185 | 4.0345185E-9 | 27.671362 | 2 |
GTACATG | 1750 | 0.0 | 25.15875 | 1 |
ACGCAGA | 3035 | 0.0 | 24.873053 | 7 |
TACATGG | 1715 | 0.0 | 24.775145 | 2 |
CGCAGAG | 3085 | 0.0 | 24.616245 | 8 |
ACATGGG | 1805 | 0.0 | 23.986408 | 3 |
GTGGTAT | 585 | 0.0 | 23.628523 | 1 |
GTAGCCC | 365 | 0.0 | 22.068413 | 3 |
TGGTATC | 535 | 0.0 | 22.007782 | 2 |
GCAGAGT | 3295 | 0.0 | 21.265118 | 9 |
CAGAGTA | 3025 | 0.0 | 20.681982 | 10-11 |