Basic Statistics
Measure | Value |
---|---|
Filename | SRR1931026_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3714329 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 169876 | 4.573531316154277 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2395 | 0.0 | 50.595024 | 1 |
GTATCAA | 4765 | 0.0 | 47.843334 | 1 |
ATCAACG | 5760 | 0.0 | 38.89431 | 3 |
TCAACGC | 5880 | 0.0 | 38.43908 | 4 |
CAACGCA | 5910 | 0.0 | 38.407616 | 5 |
TATCAAC | 6110 | 0.0 | 36.21229 | 2 |
AACGCAG | 6410 | 0.0 | 34.879272 | 6 |
ACGCAGA | 7185 | 0.0 | 29.939419 | 7 |
CGCAGAG | 7410 | 0.0 | 28.553186 | 8 |
GTACATG | 5795 | 0.0 | 27.023882 | 1 |
TACATGG | 6070 | 0.0 | 25.625593 | 2 |
GCAGAGT | 7945 | 0.0 | 24.52996 | 9 |
ACATGGG | 6185 | 0.0 | 24.474123 | 3 |
AGAGTAC | 7205 | 0.0 | 20.597513 | 10-11 |
GAGTACT | 5130 | 0.0 | 19.990528 | 12-13 |
GGCGTCG | 315 | 3.8198777E-11 | 19.672628 | 8 |
CAGAGTA | 7825 | 0.0 | 19.228508 | 10-11 |
GAGTACA | 4310 | 0.0 | 18.107882 | 1 |
CATGGGG | 4005 | 0.0 | 17.887848 | 4 |
AGTACTT | 5960 | 0.0 | 17.81106 | 12-13 |