Basic Statistics
Measure | Value |
---|---|
Filename | SRR1930995_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3604755 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 156167 | 4.332250041958469 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2115 | 0.0 | 50.284714 | 1 |
GTATCAA | 4205 | 0.0 | 40.977642 | 1 |
CAACGCA | 4845 | 0.0 | 35.681496 | 5 |
ATCAACG | 4790 | 0.0 | 34.946434 | 3 |
TCAACGC | 4900 | 0.0 | 34.7746 | 4 |
TATCAAC | 5115 | 0.0 | 32.976643 | 2 |
AACGCAG | 5400 | 0.0 | 32.263687 | 6 |
GTACATG | 5610 | 0.0 | 28.254124 | 1 |
ACGCAGA | 6190 | 0.0 | 27.519022 | 7 |
ACATGGG | 5650 | 0.0 | 26.335249 | 3 |
CGCAGAG | 6285 | 0.0 | 26.150629 | 8 |
TACATGG | 5920 | 0.0 | 25.72958 | 2 |
GCAGAGT | 6895 | 0.0 | 22.381218 | 9 |
CATGGGG | 3740 | 0.0 | 19.621843 | 4 |
AGAGTAC | 6200 | 0.0 | 18.73523 | 10-11 |
CAGAGTA | 6765 | 0.0 | 17.54377 | 10-11 |
GAGTACA | 4100 | 0.0 | 17.085186 | 1 |
GTATATG | 1410 | 0.0 | 17.043617 | 1 |
GAGTACT | 4180 | 0.0 | 16.827063 | 12-13 |
CATGGGA | 2375 | 0.0 | 16.71945 | 4 |