Basic Statistics
Measure | Value |
---|---|
Filename | SRR1930987_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2941745 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 133383 | 4.53414554966525 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2095 | 0.0 | 54.60259 | 1 |
GTATCAA | 4120 | 0.0 | 46.814785 | 1 |
ATCAACG | 4850 | 0.0 | 39.19224 | 3 |
TCAACGC | 5085 | 0.0 | 37.179817 | 4 |
CAACGCA | 5055 | 0.0 | 36.890396 | 5 |
TATCAAC | 5110 | 0.0 | 35.828278 | 2 |
AACGCAG | 5660 | 0.0 | 33.05194 | 6 |
ACGCAGA | 6315 | 0.0 | 28.260002 | 7 |
CGCAGAG | 6255 | 0.0 | 28.041763 | 8 |
GTGTAGC | 960 | 0.0 | 25.114182 | 1 |
GTACATG | 4060 | 0.0 | 24.385052 | 1 |
GCAGAGT | 6810 | 0.0 | 24.09843 | 9 |
TACATGG | 4190 | 0.0 | 22.275938 | 2 |
ACATGGG | 4115 | 0.0 | 21.074589 | 3 |
AGAGTAC | 5815 | 0.0 | 20.541012 | 10-11 |
CAGAGTA | 6475 | 0.0 | 20.390934 | 10-11 |
GAGTACT | 4550 | 0.0 | 20.269188 | 12-13 |
TACGGCG | 125 | 0.004274679 | 20.166334 | 4 |
CAACGCG | 165 | 9.840466E-4 | 18.327366 | 5 |
AGTACTT | 5065 | 0.0 | 18.018583 | 12-13 |