Basic Statistics
Measure | Value |
---|---|
Filename | SRR1930972_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 163900 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 7451 | 4.546064673581452 | No Hit |
NNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 619 | 0.3776693105552166 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT | 518 | 0.31604636973764494 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA | 514 | 0.3136058572300183 | No Hit |
NNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 446 | 0.27211714460036607 | No Hit |
NNNNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 423 | 0.25808419768151314 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNN | 420 | 0.25625381330079317 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG | 404 | 0.24649176327028677 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNN | 351 | 0.2141549725442343 | No Hit |
NNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 346 | 0.21110433190970104 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 336 | 0.2050030506406345 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNNNNNNNNNNNN | 287 | 0.17510677242220865 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 276 | 0.1683953630262355 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNN | 231 | 0.14093959731543623 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 229 | 0.13971934106162293 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 193 | 0.11775472849298353 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNANNNNNNNNNNNNNNN | 164 | 0.10006101281269067 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGGCGT | 25 | 5.676085E-5 | 74.827866 | 6 |
ATACGGG | 30 | 9.477796E-5 | 67.465355 | 3 |
CTAAGTC | 25 | 0.003645859 | 61.759716 | 2 |
TACGGGC | 35 | 2.0317902E-4 | 57.827442 | 4 |
ACGGGCG | 35 | 2.0365002E-4 | 57.800385 | 5 |
GTATACG | 45 | 9.368781E-6 | 57.184925 | 1 |
GGCGTCG | 25 | 0.0066811447 | 53.0018 | 8 |
GGTATAT | 25 | 0.0066811447 | 53.0018 | 8 |
CCTCTCG | 25 | 0.007067347 | 52.254395 | 9 |
GGTATCA | 190 | 0.0 | 48.757668 | 1 |
GTATCAA | 405 | 0.0 | 48.28949 | 1 |
GCTAAGT | 45 | 6.45766E-4 | 45.74794 | 1 |
CGATCTC | 20 | 7.8467093E-4 | 43.997353 | 92-93 |
TATACGG | 60 | 5.134718E-5 | 42.88869 | 2 |
GTATTAC | 50 | 0.0010848325 | 41.173145 | 1 |
TATCAAC | 485 | 0.0 | 40.32421 | 2 |
ATCAACG | 465 | 0.0 | 40.261585 | 3 |
CAACGCA | 500 | 0.0 | 36.414246 | 5 |
TCAACGC | 510 | 0.0 | 35.716953 | 4 |
GACCGTC | 30 | 0.0031908131 | 33.067005 | 22-23 |