SRR1930972_2.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1930972_2.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	163900
Sequences flagged as poor quality	0
Sequence length	101
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	7451	4.546064673581452	No Hit
NNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	619	0.3776693105552166	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT	518	0.31604636973764494	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA	514	0.3136058572300183	No Hit
NNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	446	0.27211714460036607	No Hit
NNNNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	423	0.25808419768151314	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNN	420	0.25625381330079317	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG	404	0.24649176327028677	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNN	351	0.2141549725442343	No Hit
NNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	346	0.21110433190970104	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	336	0.2050030506406345	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNNNNNNNNNNNN	287	0.17510677242220865	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	276	0.1683953630262355	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNN	231	0.14093959731543623	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	229	0.13971934106162293	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	193	0.11775472849298353	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNANNNNNNNNNNNNNNN	164	0.10006101281269067	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGCGT	25	5.676085E-5	74.827866	6
ATACGGG	30	9.477796E-5	67.465355	3
CTAAGTC	25	0.003645859	61.759716	2
TACGGGC	35	2.0317902E-4	57.827442	4
ACGGGCG	35	2.0365002E-4	57.800385	5
GTATACG	45	9.368781E-6	57.184925	1
GGCGTCG	25	0.0066811447	53.0018	8
GGTATAT	25	0.0066811447	53.0018	8
CCTCTCG	25	0.007067347	52.254395	9
GGTATCA	190	0.0	48.757668	1
GTATCAA	405	0.0	48.28949	1
GCTAAGT	45	6.45766E-4	45.74794	1
CGATCTC	20	7.8467093E-4	43.997353	92-93
TATACGG	60	5.134718E-5	42.88869	2
GTATTAC	50	0.0010848325	41.173145	1
TATCAAC	485	0.0	40.32421	2
ATCAACG	465	0.0	40.261585	3
CAACGCA	500	0.0	36.414246	5
TCAACGC	510	0.0	35.716953	4
GACCGTC	30	0.0031908131	33.067005	22-23