Basic Statistics
Measure | Value |
---|---|
Filename | SRR1930969_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3226593 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 5992 | 0.18570671913067438 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1965 | 0.0 | 47.736927 | 1 |
GTATCAA | 3865 | 0.0 | 46.060566 | 1 |
TCAACGC | 4800 | 0.0 | 37.068184 | 4 |
ATCAACG | 4765 | 0.0 | 36.92738 | 3 |
CAACGCA | 4920 | 0.0 | 35.590763 | 5 |
TATCAAC | 5080 | 0.0 | 34.542675 | 2 |
AACGCAG | 5560 | 0.0 | 32.632656 | 6 |
GTACATG | 6355 | 0.0 | 29.521027 | 1 |
TACATGG | 6380 | 0.0 | 28.373585 | 2 |
ACGCAGA | 6400 | 0.0 | 27.938026 | 7 |
CGCAGAG | 6755 | 0.0 | 26.348267 | 8 |
ACATGGG | 7050 | 0.0 | 25.602352 | 3 |
CATGGGG | 5505 | 0.0 | 22.340885 | 4 |
GCAGAGT | 7585 | 0.0 | 21.81389 | 9 |
AGAGTAC | 6715 | 0.0 | 18.915173 | 10-11 |
GTGTAGC | 1005 | 0.0 | 17.563297 | 1 |
CAGAGTA | 7130 | 0.0 | 17.349499 | 10-11 |
GAGTACT | 4635 | 0.0 | 17.016436 | 12-13 |
GAGTACA | 4460 | 0.0 | 16.282898 | 1 |
ATGGGGG | 3820 | 0.0 | 16.20841 | 5 |