SRR1781504_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781504_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	738749
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCCGT	168287	22.77999699491979	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCCG	15244	2.0634884108134157	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCC	8198	1.1097138540965876	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	7486	1.0133347050215973	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCC	2727	0.3691375555161496	No Hit
ATACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCCGTCTT	1797	0.24324906023561452	TruSeq Adapter, Index 2 (95% over 21bp)
ATTATACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCCGT	1365	0.1847718237182047	No Hit
CTATACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCCGTC	1352	0.1830120920637456	No Hit
CTTTATACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCCG	1016	0.13752979699464907	No Hit
CTTATACACATCTCCGAGCCCACGAGACGGGAATGATCTCGTATGCCGTC	963	0.13035550640339275	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	19660	66.457596	70
AAGGGGG	21750	60.10374	69
CCGTCTA	85	57.64734	47
GCCGTCT	22295	57.02938	46
CCGTCTT	22250	56.991287	47
TATGCCG	22465	56.979427	43
ATGCCGT	22430	56.955246	44
TGCCGTC	22375	56.95061	45
AAAAGGG	23025	56.942726	67
CGTCTTC	22355	56.89582	48
AAAGGGG	23025	56.866722	68
AATCTCG	22575	56.85288	36
CGTATGC	22715	56.833855	41
CTCGTAT	22650	56.81919	39
GTATGCC	22515	56.779003	42
TCGTATG	22870	56.770096	40
TCTCGTA	22615	56.705883	38
GCTTGAA	22850	56.62828	56
ATCTCGT	22635	56.62484	37
TGCTTGA	22720	56.55177	55