SRR1781502_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781502_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	864830
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGT	175286	20.268260814264075	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCG	16347	1.8901980736098425	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCC	9301	1.0754714799440352	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	7479	0.8647942370176798	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCC	3347	0.3870124764404565	No Hit
ATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGTCTT	2448	0.2830614109131274	RNA PCR Primer, Index 37 (95% over 22bp)
CTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGTC	1927	0.2228183573650313	No Hit
ATTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGT	1438	0.1662754529791982	No Hit
CTTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCG	1311	0.15159048599146652	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	19885	66.10762	70
AAGGGGG	22065	59.592117	69
CGTCTTC	22705	56.21676	48
GCCGTCT	22740	56.210438	46
ATGCCGT	22935	56.208855	44
TGCCGTC	22860	56.163593	45
CCGTCTT	22690	56.14595	47
TATGCCG	23020	56.14465	43
TCGTATG	23225	56.101265	40
CTCGTAT	23200	56.07767	39
CGTATGC	23120	56.05646	41
TCTCGTA	23245	55.98417	38
GCTTGAA	23140	55.9162	56
GTATGCC	23135	55.8807	42
ATCTCGT	23315	55.831104	37
CATCTCG	23395	55.700047	36
TGCTTGA	23005	55.696644	55
AAAGGGG	23655	55.616146	68
GTCTTCT	22920	55.585747	49
CTGCTTG	22940	55.564583	54