SRR1781499_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781499_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	572411
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTAACAACAATCTCGTATGCCGT	157315	27.48287506704099	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTAACAACAATCTCGTATGCCG	14206	2.481783194243297	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTAACAACAATCTCGTATGCC	7924	1.3843200078265443	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	7411	1.2946990885919383	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTAACAACAATCTCGTATGCC	2668	0.466098659879003	No Hit
ATACACATCTCCGAGCCCACGAGACTAACAACAATCTCGTATGCCGTCTT	1660	0.29000141506714583	RNA PCR Primer, Index 36 (95% over 23bp)
ATTATACACATCTCCGAGCCCACGAGACTAACAACAATCTCGTATGCCGT	1314	0.2295553369868853	No Hit
CTATACACATCTCCGAGCCCACGAGACTAACAACAATCTCGTATGCCGTC	1257	0.21959745707192907	No Hit
CTTTATACACATCTCCGAGCCCACGAGACTAACAACAATCTCGTATGCCG	928	0.16212127300139237	No Hit
CTTTACACATCTCCGAGCCCACGAGACTAACAACAATCTCGTATGCCGTC	577	0.1008016966829778	RNA PCR Primer, Index 36 (95% over 21bp)
CCTTATACACATCTCCGAGCCCACGAGACTAACAACAATCTCGTATGCCG	577	0.1008016966829778	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	17650	67.316055	70
AAGGGGG	19540	60.84075	69
ATATCCG	110	60.448357	10
ACTCGTA	65	59.24024	38
CCGTCTA	90	58.327366	47
CGTATGA	200	57.754185	41
AAAGGGG	20770	57.27146	68
CGTCTTC	20260	57.198063	48
ATGCCGT	20290	57.18748	44
GCCGTCT	20230	57.179073	46
CCGTCTT	20145	57.172108	47
TGCCGTC	20260	57.168503	45
TATGCCG	20350	57.10487	43
CTCGTAT	20455	57.00495	39
TCGTATG	20615	57.00401	40
CGTATGC	20480	56.998753	41
AAAAGGG	20920	56.977917	67
AATCTCG	20450	56.95042	36
GCTTGAA	20510	56.949516	56
GTATGCC	20430	56.915524	42