SRR1781481_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781481_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	437579
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGT	170624	38.99273045552917	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCG	12817	2.9290710934482687	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCC	7724	1.7651669755632697	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	6039	1.3800936516606144	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCC	2514	0.5745248286595106	No Hit
ATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGTCTT	2014	0.4602597473827583	TruSeq Adapter, Index 9 (95% over 21bp)
CTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGTC	1446	0.33045461505236773	No Hit
ATTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGT	1262	0.28840506514252284	No Hit
CTTTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCG	995	0.2273875117407371	No Hit
CTAATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGT	834	0.19059415556962286	No Hit
CTTTACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGTC	639	0.14603077387168947	No Hit
CATATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGT	613	0.1400889896452983	No Hit
TTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGTC	584	0.1334616149312467	No Hit
CTTAATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCG	506	0.11563626225207335	No Hit
CCTTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCG	501	0.11449361143930582	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACAA	15	0.002223491	70.00388	65
TACTACG	15	0.002223491	70.00388	42
TGTCCGA	20	7.929931E-5	69.98789	11
AGGGGGG	19895	0.0	67.24173	70
TCGGAAC	70	0.0	65.01104	33
AAGGGGG	21265	0.0	62.876755	69
GAATTCG	75	0.0	60.670036	29
AAAGGGG	22250	0.0	60.15615	68
AAAAGGG	22325	0.0	60.032448	67
AAAAAGG	22380	0.0	59.947475	66
AAAAAAG	22460	0.0	59.874203	65
CGTAATC	135	0.0	59.632942	28
GACGAAT	100	0.0	59.496502	26
TATGACG	130	0.0	59.23406	43
CCGTCTT	21845	0.0	59.18845	47
CGTCTTC	21955	0.0	59.178875	48
GCCGTCT	21880	0.0	59.17376	46
ATGCCGT	21915	0.0	59.159115	44
TGCCGTC	21920	0.0	59.12965	45
TATGCCG	21945	0.0	59.126087	43