SRR1781444_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781444_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	450605
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCCGT	198728	44.10248443758946	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCCG	14355	3.1857169805039893	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCC	8708	1.9325129548052062	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCC	2353	0.5221868376959865	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2331	0.5173045128216509	No Hit
ATACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCCGTCTT	1829	0.40589873614362915	TruSeq Adapter, Index 2 (95% over 21bp)
CTATACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCCGTC	1274	0.28273099499561705	No Hit
CTTATACACATCTCCGAGCCCACGAGACGGGAATGATCTCGTATGCCGTC	1212	0.26897171580430757	No Hit
CTTTATACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCCG	1034	0.22946926909377394	No Hit
ATTATACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCCGT	651	0.14447243150874936	No Hit
CCTTATACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCCG	648	0.14380665993497632	No Hit
CTTTACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCCGTC	609	0.13515162947592682	No Hit
CTAATACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCCGT	591	0.1311570000332886	No Hit
CATATACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCCGT	518	0.1149565584048113	No Hit
TTATACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCCGTC	513	0.11384693911518959	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCATC	30	1.02281774E-7	70.00056	6
GCGGAAT	15	0.0022259124	69.98502	24
CGACACG	20	7.9317986E-5	69.985016	23
AGGGGGG	22750	0.0	67.24668	70
GCCGTAT	50	1.4551915E-11	63.00749	46
AAGGGGG	24460	0.0	62.588394	69
CCGTATT	45	3.8380676E-10	62.229626	47
ACTCGTA	85	0.0	61.778904	38
TGACGTC	195	0.0	61.026123	45
ACAACTC	155	0.0	60.96146	8
AATATCG	190	0.0	60.80345	36
AAACTCG	105	0.0	60.013798	36
CGCATCT	35	2.9740113E-7	59.993816	7
AACTCCG	105	0.0	59.98716	10
AAAGGGG	25640	0.0	59.748913	68
AATCTCG	25130	0.0	59.735176	36
AAAAGGG	25720	0.0	59.671936	67
GAATCTC	25165	0.0	59.666008	35
TATGCCG	25155	0.0	59.655273	43
ATGCCGT	25135	0.0	59.619183	44