SRR1781442_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781442_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	507557
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGT	205484	40.48491105432493	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCG	14235	2.804611107717951	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCC	9145	1.8017680772799902	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCC	2730	0.5378706233979632	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2256	0.44448209757721796	No Hit
ATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGTCTT	2027	0.3993640123178283	RNA PCR Primer, Index 37 (95% over 22bp)
CTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGTC	1584	0.3120831748946424	No Hit
CTTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCG	1113	0.21928571569301575	No Hit
CCTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCG	716	0.14106789976298229	No Hit
CTTTACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGTC	675	0.1329899893016942	No Hit
TGACTTGCACATGTTGTTGTTGTTGTTTCTTTAGATCGGAAGAGCACACG	662	0.13042870061884676	No Hit
CTAATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGT	616	0.12136567912569426	No Hit
TTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGTC	598	0.11781927941098241	No Hit
ATTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGT	593	0.11683416837911802	No Hit
CATATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGT	512	0.1008753696629147	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATGC	75	0.0	70.01389	41
TCGTATC	15	0.0022224365	70.01389	40
CACGTAA	25	2.8353606E-6	70.01389	39
AAAATCG	15	0.0022224365	70.01389	34
ACCGGCA	15	0.0022250437	69.9932	47
TACGAGA	20	7.9281715E-5	69.9932	13
AGGGGGG	23290	0.0	67.54389	70
CGTTGTT	50	1.4551915E-11	63.000088	12
TGGCCGT	50	1.4551915E-11	63.000088	8
AAGGGGG	25180	0.0	62.446278	69
TTGGCCG	45	3.8562575E-10	62.222305	7
ATCTACG	130	0.0	61.92316	10
TCTACGA	130	0.0	61.92316	11
CGTATGA	190	0.0	60.80154	41
CCGTATT	35	2.9746298E-7	59.99417	47
AAAGGGG	26525	0.0	59.253433	68
AAAAAGG	26700	0.0	59.087894	66
AAAAGGG	26640	0.0	59.050194	67
AAAAAAG	26855	0.0	58.94233	65
GCTTGAA	26360	0.0	58.867573	56